Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015888416.1_cds_XP_016442983.1_38190
CDS Infomation

[gene=LOC107768376] [db_xref=GeneID:107768376] [protein=pectinesterase-like] [protein_id=XP_016442983.1] [location=complement(join(20430..21142,21357..22311))] [gbkey=CDS]
Sequence

ATGGCTAATAAGAAAGTGGTCATTGGTGGAATAGCCTCAATTCTTGTGGTGGCTTGTGTT
GTAGCAGCATGTGTTACACTCACAAAAAATGATGAAACTTCATCTTCTGGCCAAGTCACA
ACTTCTACAAAATCAGTAAAAGCTATGTGCCAACCTACACCTTACAAACAAACTTGTGAA
AAAACTCTTTCCTCAGCCAAAAATGCTTCTGAGCCAAAGGATTTTATTAAAGTGGCATTT
GAAGCTACTGTCACTGACATTAGAAATGCAATCATGAACACTGATTTGATCATGCAAGCA
GCTAGTGATCCTAAAACCAAAGACGCGCTTCACGCTTGTGAAGAGCTCTTTGATCTTGCC
ATTGAAGATCTAAGGACTTCTGTATCGAAATTGGAAAGCTTTGATCTAACCAAAATTAAG
GACATCGTCGATGACCTTAAGACATGGCTTAGCGCTGTGGTTGCTTACGAGGAAACTTGC
TTGGACGCTTTTGAAAAAACAGATGGTGATACAGGTGAGAAAATGGTGAAGTTATTGAAC
ACAACTCGGGAGCTAAGTATCAATGGTCTAGCCATGGTCAATAGCTTCGGTGAAATGATC
ACACAAACTACAGGCCTTAGCCGAAAATTGTTAACTACTGATGAATCTTCGTTTGTTGAG
GCTAGTAACCGTAAGCTTCTGCAAATTTCTAACGCCAAGCCTAATGCCGTGGTTGCTCAG
GATGGTAGTGGACAATATAAGACCATTACTGATGCACTTAAAGCTGTGCCAAAGAAGAAT
ACAGAGCCATTTGTTATCCTAATCAAGGCTGGTATATACAAAGAATACGTTGAAGTTGAA
AAAGGCATGACAAACGTTGTGTTTATTGGTGAAGGCTCAACCAAGACCAAAATTACTGGT
AATAAGTCCGTCAAGGGACCTGGCATTGGTTCAACTTGGCATACTTGCACTGTTGGTGTT
AGTGGAGAAGGTTTCGTGGCTAGGGATATAGGATTCGAGAACACAGCAGGACCAGCACAA
GAACAAGCAGTTGCACTACGAGTGAATGCTGACAAGGCAGTTATCTACAACTGCAAAATC
GATGGTTATCAAGACACACTATACGCACACTCTGGTAGACAGTTTTATCGCGATTGTATC
ATTTCAGGAACCATAGATTTCGTGTTTGGTGATGCAGCTGCCGTATTCCAAAACTGCAAA
TTAATAGTAAGGAGGCCAGGTGATGGGCAGAATTGCATGGTAACTGCTCAGGGAAGGACC
ACATCTGCTTCGAAAGGTGCATTCGTTATACAAAATTGTGAGATCAAAGCAGAACCAGAG
TTCCTAGCAGCAAAACCACAAATGAAGGCGTTTCTTGGACGTCCATGGAAGGAATATTCA
CGAACAATAATCATGCAATCGTTTATCGACGGATTCATTGATCCATCAGGGTGGGCTCCA
TGGAATATAACTGATTTTGGAATACATACTTGTTGGTACGCTGAGTATCAGAATAGAGGT
GCAGGAGCTAGCCTTGACAAAAGGGTTAGTCATTGGAGAGGTTACCAGAGGGGAATTTCA
GGAGATGTTGCAAATTCATTTACTGCTGGTGTATTTATTAATCCCACAGATAATAGCTTC
CTTCCTAAGGCTGATATTCCCTATGAGGCTGGCATGATGAAGGTGTAA

Peptide Sequence

PEP ID

XP_016442983.1
PEP Infomation

PREDICTED: pectinesterase-like [Nicotiana tabacum]
Sequence

MANKKVVIGGIASILVVACVVAACVTLTKNDETSSSGQVTTSTKSVKAMCQPTPYKQTCE
KTLSSAKNASEPKDFIKVAFEATVTDIRNAIMNTDLIMQAASDPKTKDALHACEELFDLA
IEDLRTSVSKLESFDLTKIKDIVDDLKTWLSAVVAYEETCLDAFEKTDGDTGEKMVKLLN
TTRELSINGLAMVNSFGEMITQTTGLSRKLLTTDESSFVEASNRKLLQISNAKPNAVVAQ
DGSGQYKTITDALKAVPKKNTEPFVILIKAGIYKEYVEVEKGMTNVVFIGEGSTKTKITG
NKSVKGPGIGSTWHTCTVGVSGEGFVARDIGFENTAGPAQEQAVALRVNADKAVIYNCKI
DGYQDTLYAHSGRQFYRDCIISGTIDFVFGDAAAVFQNCKLIVRRPGDGQNCMVTAQGRT
TSASKGAFVIQNCEIKAEPEFLAAKPQMKAFLGRPWKEYSRTIIMQSFIDGFIDPSGWAP
WNITDFGIHTCWYAEYQNRGAGASLDKRVSHWRGYQRGISGDVANSFTAGVFINPTDNSF
LPKADIPYEAGMMKV

Transcript Sequence

Gene sequence data has not been registered.